4DMU Crystal structure of the von Willebrand factor A3 domain in complex with a collagen III derived triple-helical peptide date 2012-02-08
authors Brondijk, T.H.C., Huizinga, E.G.
compound source
symmetry
R_factor
R_Free 0.25310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand HYP, SO4 enzyme
Primary referenceImplications for collagen I chain registry from the structure of the collagen von Willebrand factor A3 domain complex., Brondijk TH, Bihan D, Farndale RW, Huizinga EG, Proc Natl Acad Sci U S A. 2012 Mar 21. PMID:22440751
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (500 Kb) [Save to disk]
  • Biological Unit Coordinates (4dmu.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (4dmu.pdb2.gz) 85 Kb
  • Biological Unit Coordinates (4dmu.pdb3.gz) 85 Kb
  • Biological Unit Coordinates (4dmu.pdb4.gz) 85 Kb
  • Biological Unit Coordinates (4dmu.pdb5.gz) 85 Kb
  • Biological Unit Coordinates (4dmu.pdb6.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4DMU
  • CSU: Contacts of Structural Units for 4DMU
  • Structure Factors (1549 Kb)
  • Retrieve 4DMU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DMU from S2C, [Save to disk]
  • Re-refined 4dmu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DMU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DMU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DMU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dmu_L] [4dmu_G] [4dmu_D] [4dmu_C] [4dmu_E] [4dmu_B] [4dmu_A] [4dmu_F] [4dmu_J] [4dmu] [4dmu_K] [4dmu_H] [4dmu_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DMU: [VWA ] by SMART
  • Other resources with information on 4DMU
  • Community annotation for 4DMU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science