4DN5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AGS, EDO, GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the nuclear factor kappaB-inducing kinase (NIK) kinase domain reveals a constitutively active conformation., Liu J, Sudom A, Min X, Cao Z, Gao X, Ayres M, Lee F, Cao P, Johnstone S, Plotnikova O, Walker N, Chen G, Wang Z, J Biol Chem. 2012 Aug 10;287(33):27326-34. Epub 2012 Jun 20. PMID:22718757
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (4dn5.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (4dn5.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (4dn5.pdb3.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 4DN5
  • CSU: Contacts of Structural Units for 4DN5
  • Structure Factors (1094 Kb)
  • Retrieve 4DN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DN5 from S2C, [Save to disk]
  • Re-refined 4dn5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dn5] [4dn5_A] [4dn5_B]
  • SWISS-PROT database:
  • Domain found in 4DN5: [STYKc ] by SMART

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