4DN5	Crystal Structure of NF-kB-inducing Kinase (NIK)	date	2012-02-08
authors	Min, X., Liu, J., Sudom, A., Walker, N.P., Wang, Z.
compound		source
symmetry		R_factor R_Free 0.22185
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.50
ligand	AGS, EDO, GOL, MG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the nuclear factor kappaB-inducing kinase (NIK) kinase domain reveals a constitutively active conformation., Liu J, Sudom A, Min X, Cao Z, Gao X, Ayres M, Lee F, Cao P, Johnstone S, Plotnikova O, Walker N, Chen G, Wang Z, J Biol Chem. 2012 Aug 10;287(33):27326-34. Epub 2012 Jun 20. PMID:22718757

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (4dn5.pdb1.gz) 55 Kb Biological Unit Coordinates (4dn5.pdb2.gz) 54 Kb Biological Unit Coordinates (4dn5.pdb3.gz) 106 Kb LPC: Ligand-Protein Contacts for 4DN5 CSU: Contacts of Structural Units for 4DN5 Structure Factors (1094 Kb) Retrieve 4DN5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DN5 from S2C, [Save to disk] Re-refined 4dn5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DN5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4DN5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4DN5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dn5] [4dn5_A] [4dn5_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4DN5: [STYKc ] by SMART

Other resources with information on 4DN5

Community annotation for 4DN5 at PDBWiki (http://pdbwiki.org)

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