4DSJ Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, dGTP and Calcium date 2012-02-19
authors Gan, J.H., Abdur, R., Liu, H.H., Sheng, J., Caton-Willians, J., Soares, A.S., Huang, Z.
compound source
symmetry
R_factor
R_Free 0.27710
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.86
ligand CA, DGT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • Biological Unit Coordinates (4dsj.pdb1.gz) 207 Kb
  • Biological Unit Coordinates (4dsj.pdb2.gz) 206 Kb
  • LPC: Ligand-Protein Contacts for 4DSJ
  • CSU: Contacts of Structural Units for 4DSJ
  • Structure Factors (754 Kb)
  • Retrieve 4DSJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DSJ from S2C, [Save to disk]
  • Re-refined 4dsj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DSJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DSJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DSJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dsj_B] [4dsj] [4dsj_C] [4dsj_F] [4dsj_D] [4dsj_E] [4dsj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4DSJ: [35EXOc] [POLAc ] by SMART
    • Other resources with information on 4DSJ
  • Community annotation for 4DSJ at PDBWiki (http://pdbwiki.org)

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