4DT5 Crystal Structure of Rhagium inquisitor Antifreeze Protein date
authors Meng, W., Nguyen, J.B., Hakim, A., Thakral, D., Zhu, D.F.
compound source
symmetry
R_factor
R_Free 0.16086
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.15
ligand GOL, SO4 enzyme
Primary referenceCrystal structure of an insect antifreeze protein and its implications for ice binding., Hakim A, Nguyen JB, Basu K, Zhu DF, Thakral D, Davies PL, Isaacs FJ, Modis Y, Meng W, J Biol Chem. 2013 Apr 26;288(17):12295-304. doi: 10.1074/jbc.M113.450973. Epub, 2013 Mar 12. PMID:23486477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4dt5.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 4DT5
  • CSU: Contacts of Structural Units for 4DT5
  • Structure Factors (1126 Kb)
  • Retrieve 4DT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DT5 from S2C, [Save to disk]
  • Re-refined 4dt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DT5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DT5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dt5_A] [4dt5] [4dt5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DT5
  • Community annotation for 4DT5 at PDBWiki (http://pdbwiki.org)

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