4E08 Crystal structure of Drosophila melanogaster DJ-1beta date 2012-03-02
authors Lin, J., Prahlad, J., Wilson, M.A.
compound source
symmetry
R_factor
R_Free 0.24559
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand SO4 enzyme
Gene DMEL
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • oxidoreductase activity, act...


  • Primary referenceConservation of Oxidative Protein Stabilization in an Insect Homologue of Parkinsonism-Associated Protein DJ-1., Lin J, Prahlad J, Wilson MA, Biochemistry. 2012 Apr 24. PMID:22515803
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4e08.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 4E08
  • CSU: Contacts of Structural Units for 4E08
  • Structure Factors (286 Kb)
  • Retrieve 4E08 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E08 from S2C, [Save to disk]
  • Re-refined 4e08 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E08
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E08, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e08] [4e08_A] [4e08_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4E08
  • Community annotation for 4E08 at PDBWiki (http://pdbwiki.org)
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