4EDK date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BEN, GTP, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBinding Mechanism of MetalNTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases., Rymer RU, Solorio FA, Tehranchi AK, Chu C, Corn JE, Keck JL, Wang JD, Berger JM, Structure. 2012 Jul 10. PMID:22795082
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4edk.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 4EDK
  • CSU: Contacts of Structural Units for 4EDK
  • Structure Factors (261 Kb)
  • Retrieve 4EDK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EDK from S2C, [Save to disk]
  • Re-refined 4edk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EDK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4edk] [4edk_A]
  • SWISS-PROT database:
  • Domain found in 4EDK: [TOPRIM ] by SMART

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science