4FM9 Human topoisomerase II alpha bound to DNA date 2012-06-15
authors Wendorff, T.J., Schmidt, B.H., Heslop, P., Austin, C.A., Berger, J.M.
compound source
symmetry
R_factor
R_Free 0.2702
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structure of DNA-Bound Human Topoisomerase II Alpha: Conformational Mechanisms for Coordinating Inter-Subunit Interactions with DNA Cleavage., Wendorff TJ, Schmidt BH, Heslop P, Austin CA, Berger JM, J Mol Biol. 2012 Dec 7;424(3-4):109-24. doi: 10.1016/j.jmb.2012.07.014. Epub 2012, Jul 25. PMID:22841979
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (4fm9.pdb1.gz) 538 Kb
  • LPC: Ligand-Protein Contacts for 4FM9
  • CSU: Contacts of Structural Units for 4FM9
  • Structure Factors (304 Kb)
  • Retrieve 4FM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FM9 from S2C, [Save to disk]
  • Re-refined 4fm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FM9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FM9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fm9_C] [4fm9_A] [4fm9] [4fm9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4FM9: [TOP2c] [TOP4c ] by SMART
  • Other resources with information on 4FM9
  • Community annotation for 4FM9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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