4GEE	Pyrrolopyrimidine inhibitors of DNA gyrase B and topoisomerase IV, part I: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.	date	2012-08-01
authors	Bensen, D.C., Chen, Z., Tari, L.W.
compound		source
symmetry		R_factor R_Free 0.21465
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.70
ligand	0WT, GOL	enzyme
Gene	EF
Gene Ontology	Chain Function Process Component A
Primary reference	Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity., Tari LW, Trzoss M, Bensen DC, Li X, Chen Z, Lam T, Zhang J, Creighton CJ, Cunningham ML, Kwan B, Stidham M, Shaw KJ, Lightstone FC, Wong SE, Nguyen TB, Nix J, Finn J, Bioorg Med Chem Lett. 2012 Dec 5. pii: S0960-894X(12)01475-8. doi:, 10.1016/j.bmcl.2012.11.032. PMID:23352267

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (4gee.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 4GEE CSU: Contacts of Structural Units for 4GEE Structure Factors (926 Kb) Retrieve 4GEE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GEE from S2C, [Save to disk] Re-refined 4gee structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GEE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4GEE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4GEE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gee_A] [4gee] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4GEE: [HATPase_c] [TOP2c ] by SMART

Other resources with information on 4GEE

Community annotation for 4GEE at PDBWiki (http://pdbwiki.org)

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