4GLS	Crystal Structure of Chemically Synthesized Heterochiral {D-Protein Antagonist plus VEGF-A} Protein Complex in space group P21	date
authors	Mandal, K., Uppalapati, M., Ault-Riche, D., Kenney, J., Lowitz, J., Sidhu, S., Kent, S.B.H.
compound		source
symmetry		R_factor R_Free 0.2313
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.60
ligand	DAL, DAR, DAS, DCY, DGL, DGN, DHI, DIL, DLE, DLY, DPN, DPR, DSG, DSN, DTH, DTR, DTY, DVA, GOL, MED, PEG	enzyme
Gene Ontology	Chain Function Process Component F, E
Primary reference	Chemical synthesis and X-ray structure of a heterochiral {D-protein antagonist plus vascular endothelial growth factor} protein complex by racemic crystallography., Mandal K, Uppalapati M, Ault-Riche D, Kenney J, Lowitz J, Sidhu SS, Kent SB, Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14779-84. doi:, 10.1073/pnas.1210483109. Epub 2012 Aug 27. PMID:22927390

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk] Biological Unit Coordinates (4gls.pdb1.gz) 227 Kb LPC: Ligand-Protein Contacts for 4GLS CSU: Contacts of Structural Units for 4GLS Structure Factors (1167 Kb) Retrieve 4GLS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GLS from S2C, [Save to disk] Re-refined 4gls structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GLS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4GLS

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4GLS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gls] [4gls_F] [4gls_B] [4gls_E] [4gls_A] [4gls_G] [4gls_D] [4gls_H] [4gls_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4GLS: [PDGF ] by SMART

Other resources with information on 4GLS

Community annotation for 4GLS at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

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