4GSK Crystal structure of an Atg7-Atg10 crosslinked complex date
authors Kaiser, S.E., Mao, K., Taherbhoy, A.M., Yu, S., Olszewski, J.L., Duda, D.M., Kurinov, I., Deng, A., Fenn, T.D., Klionsky, D.J., Schulman, B.A.
compound source
symmetry
R_factor
R_Free 0.2855
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Z, Y


Primary referenceNoncanonical E2 recruitment by the autophagy E1 revealed by Atg7-Atg3 and Atg7-Atg10 structures., Kaiser SE, Mao K, Taherbhoy AM, Yu S, Olszewski JL, Duda DM, Kurinov I, Deng A, Fenn TD, Klionsky DJ, Schulman BA, Nat Struct Mol Biol. 2012 Nov 11. doi: 10.1038/nsmb.2415. PMID:23142976
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (4gsk.pdb1.gz) 224 Kb
  • LPC: Ligand-Protein Contacts for 4GSK
  • CSU: Contacts of Structural Units for 4GSK
  • Structure Factors (635 Kb)
  • Retrieve 4GSK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GSK from S2C, [Save to disk]
  • Re-refined 4gsk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GSK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GSK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GSK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gsk_Y] [4gsk] [4gsk_A] [4gsk_B] [4gsk_Z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GSK
  • Community annotation for 4GSK at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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