4HPM PCGF1 Ub fold (RAWUL)/BCORL1 PUFD Complex date 2012-10-24
authors Junco, S.E., Wang, R., Gaipa, J., Taylor, A.B., Gearhart, M.D., Bardwell, V.J., Hart, P.J., Kim, C.A.
compound source
symmetry
R_factor
R_Free 0.2469
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand PO4 enzyme
Primary referenceStructure of the Polycomb Group Protein PCGF1 in Complex with BCOR Reveals Basis for Binding Selectivity of PCGF Homologs., Junco SE, Wang R, Gaipa JC, Taylor AB, Schirf V, Gearhart MD, Bardwell VJ, Demeler B, Hart PJ, Kim CA, Structure. 2013 Apr 2;21(4):665-71. doi: 10.1016/j.str.2013.02.013. Epub 2013 Mar, 21. PMID:23523425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (4hpm.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (4hpm.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4HPM
  • CSU: Contacts of Structural Units for 4HPM
  • Structure Factors (480 Kb)
  • Retrieve 4HPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HPM from S2C, [Save to disk]
  • Re-refined 4hpm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HPM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HPM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hpm_B] [4hpm_D] [4hpm_A] [4hpm_C] [4hpm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HPM
  • Community annotation for 4HPM at PDBWiki (http://pdbwiki.org)

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