4I47 Crystal structure of the Ribosome inactivating protein complexed with methylated guanine date
authors Yamini, S., Kushwaha, G.S., Bhushan, A., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
compound source
symmetry
R_factor
R_Free 0.19926
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand MY6, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceFirst structural evidence of sequestration of mRNA cap structures by type 1 ribosome inactivating protein from Momordica balsamina., Kushwaha GS, Yamini S, Kumar M, Sinha M, Kaur P, Sharma S, Singh TP, Proteins. 2013 May;81(5):896-905. doi: 10.1002/prot.24248. Epub 2013 Feb 25. PMID:23280611
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (4i47.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4I47
  • CSU: Contacts of Structural Units for 4I47
  • Structure Factors (167 Kb)
  • Retrieve 4I47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I47 from S2C, [Save to disk]
  • Re-refined 4i47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I47
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I47, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i47_A] [4i47]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4I47
  • Community annotation for 4I47 at PDBWiki (http://pdbwiki.org)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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