4IXR RT fs X-ray diffraction of Photosystem II, first illuminated state date
authors Kern, J., Alonso-Mori, R., Tran, R., Hattne, J., Gildea, R.J., Echols, N., Gloeckner, C., Hellmich, J., Laksmono, H., Sierra, R.G., Lassalle-Kaiser, B., Koroidov, S., Lampe, A., Han, G., Gul, S., DiFiore, D., Milathianaki, D., Fry, A.R., Miahnahri, A., Schafer, D.W., Messerschmidt, M., Seibert, M.M., Koglin, J.E., Sokaras, D., Weng, T.C., Sellberg, J., Latimer, M.J., Grosse-Kunstleve, R.W., Zwart, P.H., White, W.E., Glatzel, P., Adams, P.D., Bogan, M.J., Williams, G.J., Boutet, S., Messinger, J., Zouni, A., Sauter, N.K., Yachandra, V.K., Bergmann, U., Yano, J.
compound source
symmetry
R_factor
R_Free 0.3132
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 5.90
ligand BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, LMT, OEC, PHO, PL9, SQD enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, b


E, e


F, f


H, h


I, i


K, k


L, l


M, m


O, o


T, t


Z, z


a, A


c, C


d, D


j, J


u, U


v, V


x, X


y, g


Primary referenceSimultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature., Kern J, Alonso-Mori R, Tran R, Hattne J, Gildea RJ, Echols N, Glockner C, Hellmich J, Laksmono H, Sierra RG, Lassalle-Kaiser B, Koroidov S, Lampe A, Han G, Gul S, Difiore D, Milathianaki D, Fry AR, Miahnahri A, Schafer DW, Messerschmidt M, Seibert MM, Koglin JE, Sokaras D, Weng TC, Sellberg J, Latimer MJ, Grosse-Kunstleve RW, Zwart PH, White WE, Glatzel P, Adams PD, Bogan MJ, Williams GJ, Boutet S, Messinger J, Zouni A, Sauter NK, Yachandra VK, Bergmann U, Yano J, Science. 2013 Feb 14. PMID:23413188
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1099 Kb) [Save to disk]
  • Biological Unit Coordinates (4ixr.pdb1.gz) 1024 Kb
  • LPC: Ligand-Protein Contacts for 4IXR
  • CSU: Contacts of Structural Units for 4IXR
  • Structure Factors (523 Kb)
  • Retrieve 4IXR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IXR from S2C, [Save to disk]
  • Re-refined 4ixr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IXR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IXR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IXR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ixr_a] [4ixr_e] [4ixr_i] [4ixr_V] [4ixr_I] [4ixr_T] [4ixr_J] [4ixr_u] [4ixr_C] [4ixr_m] [4ixr_Z] [4ixr_l] [4ixr_D] [4ixr_f] [4ixr_Y] [4ixr_O] [4ixr_U] [4ixr_z] [4ixr_M] [4ixr_K] [4ixr_j] [4ixr_E] [4ixr_G] [4ixr_y] [4ixr_t] [4ixr_c] [4ixr_g] [4ixr_k] [4ixr_A] [4ixr_v] [4ixr_h] [4ixr] [4ixr_b] [4ixr_F] [4ixr_B] [4ixr_x] [4ixr_L] [4ixr_H] [4ixr_X] [4ixr_d] [4ixr_o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IXR
  • Community annotation for 4IXR at PDBWiki (http://pdbwiki.org)

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