4J8F Crystal structure of a fusion protein containing the NBD of Hsp70 and the middle domain of Hip date
authors Li, Z., Bracher, A.
compound source
symmetry
R_factor
R_Free 0.2613
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand ADP, IOD, MG, PO4 enzyme
Primary referenceStructure and function of Hip, an attenuator of the Hsp70 chaperone cycle., Li Z, Hartl FU, Bracher A, Nat Struct Mol Biol. 2013 Aug;20(8):929-35. doi: 10.1038/nsmb.2608. Epub 2013 Jun, 30. PMID:23812373
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (4j8f.pdb1.gz) 357 Kb
  • Biological Unit Coordinates (4j8f.pdb2.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 4J8F
  • CSU: Contacts of Structural Units for 4J8F
  • Structure Factors (247 Kb)
  • Retrieve 4J8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J8F from S2C, [Save to disk]
  • Re-refined 4j8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4J8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4J8F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J8F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j8f] [4j8f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4J8F: [TPR ] by SMART
  • Other resources with information on 4J8F
  • Community annotation for 4J8F at PDBWiki (http://pdbwiki.org)

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