4JDV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 144, 1PE, GOL, SO4 enzyme
Primary referenceStructural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody., Scharf L, West AP Jr, Gao H, Lee T, Scheid JF, Nussenzweig MC, Bjorkman PJ, Diskin R, Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6049-54. doi:, 10.1073/pnas.1303682110. Epub 2013 Mar 22. PMID:23524883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk]
  • Biological Unit Coordinates (4jdv.pdb1.gz) 143 Kb
  • Biological Unit Coordinates (4jdv.pdb2.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 4JDV
  • CSU: Contacts of Structural Units for 4JDV
  • Structure Factors (1018 Kb)
  • Retrieve 4JDV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JDV from S2C, [Save to disk]
  • Re-refined 4jdv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JDV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jdv] [4jdv_A] [4jdv_B] [4jdv_H] [4jdv_L]
  • SWISS-PROT database:
  • Domains found in 4JDV: [IG_like] [IGv ] by SMART

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