4KB8 CK1d in complex with 1-{4-[3-(4-FLUOROPHENYL)-1-METHYL-1H-PYRAZOL-4-YL]PYRIDIN-2-YL}-N-METHYLMETHANAMINE ligand date 2013-04-23
authors Liu, S.
compound source
symmetry
R_factor
R_Free 0.2318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand 1QN, 1QO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceLigand-protein interactions of selective casein kinase 1delta inhibitors., Mente S, Arnold E, Butler T, Chakrapani S, Chandrasekaran R, Cherry K, Dirico K, Doran A, Fisher K, Galatsis P, Green M, Hayward M, Humphrey J, Knafels J, Li J, Liu S, Marconi M, McDonald S, Ohren J, Paradis V, Sneed B, Walton K, Wager T, J Med Chem. 2013 Sep 12;56(17):6819-28. doi: 10.1021/jm4006324. Epub 2013 Aug 28. PMID:23919824
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (386 Kb) [Save to disk]
  • Biological Unit Coordinates (4kb8.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (4kb8.pdb2.gz) 100 Kb
  • Biological Unit Coordinates (4kb8.pdb3.gz) 98 Kb
  • Biological Unit Coordinates (4kb8.pdb4.gz) 98 Kb
  • Biological Unit Coordinates (4kb8.pdb5.gz) 189 Kb
  • Biological Unit Coordinates (4kb8.pdb6.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 4KB8
  • CSU: Contacts of Structural Units for 4KB8
  • Structure Factors (1714 Kb)
  • Retrieve 4KB8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KB8 from S2C, [Save to disk]
  • Re-refined 4kb8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KB8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KB8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KB8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kb8_C] [4kb8_B] [4kb8] [4kb8_A] [4kb8_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KB8: [STYKc ] by SMART
  • Other resources with information on 4KB8
  • Community annotation for 4KB8 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science