OCA Atlas for 4M17

4M17

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Primary reference

Molecular mechanisms of inhibition of influenza by surfactant protein d revealed by large-scale molecular dynamics simulation., Goh BC, Rynkiewicz MJ, Cafarella TR, White MR, Hartshorn KL, Allen K, Crouch EC, Calin O, Seeberger PH, Schulten K, Seaton BA, Biochemistry. 2013 Nov 26;52(47):8527-38. doi: 10.1021/bi4010683. Epub 2013 Nov, 13. PMID:24224757

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]

Biological Unit Coordinates (4m17.pdb1.gz) 76 Kb

Biological Unit Coordinates (4m17.pdb2.gz) 74 Kb

Biological Unit Coordinates (4m17.pdb3.gz) 74 Kb

Biological Unit Coordinates (4m17.pdb4.gz) 73 Kb

LPC: Ligand-Protein Contacts for 4M17

CSU: Contacts of Structural Units for 4M17

Structure Factors (990 Kb)

Retrieve 4M17 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4M17 from S2C, [Save to disk]

Re-refined 4m17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4M17 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4m17] [4m17_A] [4m17_B] [4m17_C] [4m17_D] [4m17_E] [4m17_F] [4m17_G] [4m17_H] [4m17_I] [4m17_J] [4m17_K] [4m17_L]

SWISS-PROT database:

Domain found in 4M17: [CLECT ] by SMART

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