4M63 Crystal Structure of a Filament-Like Actin Trimer Bound to the Bacterial Effector VopL date
authors Tomchick, D.R., Zahm, J.A., Rosen, M.K.
compound source
symmetry
R_factor
R_Free 0.2715
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.75
ligand ATP, CA enzyme
Gene VPBB
Gene
Ontology
ChainFunctionProcessComponent
D, C, E

  • Ino80 complex
    • Primary referenceThe Bacterial Effector VopL Organizes Actin into Filament-like Structures., Zahm JA, Padrick SB, Chen Z, Pak CW, Yunus AA, Henry L, Tomchick DR, Chen Z, Rosen MK, Cell. 2013 Oct 10;155(2):423-34. doi: 10.1016/j.cell.2013.09.019. PMID:24120140
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (736 Kb) [Save to disk]
  • Biological Unit Coordinates (4m63.pdb1.gz) 726 Kb
  • LPC: Ligand-Protein Contacts for 4M63
  • CSU: Contacts of Structural Units for 4M63
  • Structure Factors (1235 Kb)
  • Retrieve 4M63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M63 from S2C, [Save to disk]
  • Re-refined 4m63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M63
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M63, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m63_A] [4m63_C] [4m63_B] [4m63_E] [4m63_D] [4m63]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M63: [ACTIN ] by SMART
    • Other resources with information on 4M63
  • Community annotation for 4M63 at PDBWiki (http://pdbwiki.org)

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