4MJ3 Haloalkane dehalogenase DmrA from Mycobacterium rhodesiae JS60 date
authors Fung, H., Gadd, M.S., Guss, J.M., Matthews, J.M.
compound source
symmetry
R_factor
R_Free 0.1895
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand CL, K, MSE enzyme
Gene MYCRHDRAFT
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBiochemical and biophysical characterisation of haloalkane dehalogenases DmrA and DmrB in Mycobacterium strain JS60 and their role in growth on haloalkanes., Fung HK, Gadd MS, Drury TA, Cheung S, Guss JM, Coleman NV, Matthews JM, Mol Microbiol. 2015 Aug;97(3):439-53. doi: 10.1111/mmi.13039. Epub 2015 May 20. PMID:25899475
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk]
  • Biological Unit Coordinates (4mj3.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (4mj3.pdb2.gz) 102 Kb
  • Biological Unit Coordinates (4mj3.pdb3.gz) 101 Kb
  • Biological Unit Coordinates (4mj3.pdb4.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 4MJ3
  • CSU: Contacts of Structural Units for 4MJ3
  • Structure Factors (3635 Kb)
  • Retrieve 4MJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MJ3 from S2C, [Save to disk]
  • Re-refined 4mj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MJ3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MJ3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mj3_A] [4mj3_D] [4mj3_C] [4mj3] [4mj3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MJ3
  • Community annotation for 4MJ3 at PDBWiki (http://pdbwiki.org)

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