4MSL Crystal structure of the Vps10p domain of human sortilin/NTS3 in complex with AF40431 date 2013-09-18
authors Andersen, J.L., Strandbygaard, D., Thirup, S.
compound source
symmetry
R_factor
R_Free 0.2273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand 2ET, BMA, MAN, NAG, PG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of the first small-molecule ligand of the neuronal receptor sortilin and structure determination of the receptor-ligand complex., Andersen JL, Schroder TJ, Christensen S, Strandbygard D, Pallesen LT, Garcia-Alai MM, Lindberg S, Langgard M, Eskildsen JC, David L, Tagmose L, Simonsen KB, Maltas PJ, Ronn LC, de Jong IE, Malik IJ, Egebjerg J, Karlsson JJ, Uppalanchi S, Sakumudi DR, Eradi P, Watson SP, Thirup S, Acta Crystallogr D Biol Crystallogr. 2014 Feb;70(Pt 2):451-60. doi:, 10.1107/S1399004713030149. Epub 2014 Jan 29. PMID:24531479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (4msl.pdb1.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 4MSL
  • CSU: Contacts of Structural Units for 4MSL
  • Structure Factors (550 Kb)
  • Retrieve 4MSL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MSL from S2C, [Save to disk]
  • Re-refined 4msl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MSL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MSL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MSL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4msl_A] [4msl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MSL: [VPS10 ] by SMART
    • Other resources with information on 4MSL
  • Community annotation for 4MSL at PDBWiki (http://pdbwiki.org)

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