4N9F Crystal structure of the Vif-CBFbeta-CUL5-ElOB-ElOC pentameric complex date 2013-10-21
authors Guo, Y.Y., Dong, L.Y., Huang, Z.W.
compound source
symmetry
R_factor
R_Free 0.3238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.30
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
I, U, w, r, x, V, C, f, O, 3, 9, l


S, 7, d, 2, j, 1, v, q, b, G, M, p


T, K, Y, E, Z, t, B, z, Q, h, n, 5


a, N, u, k, c, F, 0, L, i, 6, R, o


y, g, e, J, W, s, H, D, X, P, m, 4


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3119 Kb) [Save to disk]
  • Biological Unit Coordinates (4n9f.pdb1.gz) 278 Kb
  • Biological Unit Coordinates (4n9f.pdb2.gz) 278 Kb
  • Biological Unit Coordinates (4n9f.pdb3.gz) 278 Kb
  • Biological Unit Coordinates (4n9f.pdb4.gz) 277 Kb
  • Biological Unit Coordinates (4n9f.pdb5.gz) 277 Kb
  • Biological Unit Coordinates (4n9f.pdb6.gz) 280 Kb
  • Biological Unit Coordinates (4n9f.pdb7.gz) 276 Kb
  • Biological Unit Coordinates (4n9f.pdb8.gz) 276 Kb
  • Biological Unit Coordinates (4n9f.pdb9.gz) 279 Kb
  • LPC: Ligand-Protein Contacts for 4N9F
  • CSU: Contacts of Structural Units for 4N9F
  • Structure Factors (3110 Kb)
  • Retrieve 4N9F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N9F from S2C, [Save to disk]
  • Re-refined 4n9f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4N9F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4N9F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N9F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n9f_O] [4n9f_9] [4n9f_u] [4n9f_s] [4n9f_c] [4n9f_U] [4n9f_G] [4n9f_5] [4n9f_S] [4n9f_y] [4n9f_6] [4n9f_I] [4n9f_z] [4n9f_i] [4n9f_D] [4n9f_C] [4n9f_M] [4n9f_P] [4n9f_V] [4n9f_T] [4n9f_r] [4n9f_q] [4n9f_h] [4n9f_Q] [4n9f_m] [4n9f_R] [4n9f_B] [4n9f_e] [4n9f_j] [4n9f_L] [4n9f_k] [4n9f_g] [4n9f_1] [4n9f_d] [4n9f_N] [4n9f_x] [4n9f_0] [4n9f_n] [4n9f_W] [4n9f] [4n9f_v] [4n9f_p] [4n9f_7] [4n9f_K] [4n9f_o] [4n9f_f] [4n9f_Z] [4n9f_2] [4n9f_H] [4n9f_X] [4n9f_F] [4n9f_w] [4n9f_t] [4n9f_J] [4n9f_E] [4n9f_4] [4n9f_l] [4n9f_Y] [4n9f_a] [4n9f_3] [4n9f_b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4N9F: [Skp1] [UBQ ] by SMART
    • Other resources with information on 4N9F
  • Community annotation for 4N9F at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science