OCA Atlas for 4NE9

4NE9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, FUC, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A

Primary reference

Design and Synthesis of Truncated EGF-A Peptides that Restore LDL-R Recycling in the Presence of PCSK9 In Vitro., Schroeder CI, Swedberg JE, Withka JM, Rosengren KJ, Akcan M, Clayton DJ, Daly NL, Cheneval O, Borzilleri KA, Griffor M, Stock I, Colless B, Walsh P, Sunderland P, Reyes A, Dullea R, Ammirati M, Liu S, McClure KF, Tu M, Bhattacharya SK, Liras S, Price DA, Craik DJ, Chem Biol. 2014 Feb 20;21(2):284-94. doi: 10.1016/j.chembiol.2013.11.014. Epub, 2014 Jan 16. PMID:24440079

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (376 Kb) [Save to disk]

Biological Unit Coordinates (4ne9.pdb1.gz) 185 Kb

Biological Unit Coordinates (4ne9.pdb2.gz) 189 Kb

LPC: Ligand-Protein Contacts for 4NE9

CSU: Contacts of Structural Units for 4NE9

Structure Factors (1201 Kb)

Retrieve 4NE9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4NE9 from S2C, [Save to disk]

Re-refined 4ne9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4NE9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ne9] [4ne9_A] [4ne9_B] [4ne9_C] [4ne9_D] [4ne9_P]

SWISS-PROT database:

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