OCA Atlas for 4NQD

4NQD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

2LJ, GOL, Q87

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, F		cellular response to iron io...

Primary reference

T-cell activation by transitory neo-antigens derived from distinct microbial pathways., Corbett AJ, Eckle SB, Birkinshaw RW, Liu L, Patel O, Mahony J, Chen Z, Reantragoon R, Meehan B, Cao H, Williamson NA, Strugnell RA, Van Sinderen D, Mak JY, Fairlie DP, Kjer-Nielsen L, Rossjohn J, McCluskey J, Nature. 2014 Apr 2. doi: 10.1038/nature13160. PMID:24695216

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (267 Kb) [Save to disk]

Biological Unit Coordinates (4nqd.pdb1.gz) 66 Kb

Biological Unit Coordinates (4nqd.pdb2.gz) 63 Kb

Biological Unit Coordinates (4nqd.pdb3.gz) 77 Kb

Biological Unit Coordinates (4nqd.pdb4.gz) 73 Kb

Biological Unit Coordinates (4nqd.pdb5.gz) 262 Kb

LPC: Ligand-Protein Contacts for 4NQD

CSU: Contacts of Structural Units for 4NQD

Structure Factors (5770 Kb)

Retrieve 4NQD in mmCIF format [Save to disk]

Re-refined 4nqd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4NQD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4nqd] [4nqd_A] [4nqd_B] [4nqd_C] [4nqd_D] [4nqd_E] [4nqd_F] [4nqd_G] [4nqd_H]

SWISS-PROT database:

Domains found in 4NQD: [IG_like] [IGc1] [IGv ] by SMART

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