OCA Atlas for 4ODM

4ODM

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ACT, CL, GOL, NH2

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C, D, B	peptidyl-prolyl cis-trans is...

Primary reference

Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD., Quistgaard EM, Weininger U, Ural-Blimke Y, Modig K, Nordlund P, Akke M, Low C, BMC Biol. 2016 Sep 23;14(1):82. PMID:27664121

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]

Biological Unit Coordinates (4odm.pdb1.gz) 57 Kb

Biological Unit Coordinates (4odm.pdb2.gz) 59 Kb

Biological Unit Coordinates (4odm.pdb3.gz) 60 Kb

Biological Unit Coordinates (4odm.pdb4.gz) 61 Kb

Biological Unit Coordinates (4odm.pdb5.gz) 4 Kb

LPC: Ligand-Protein Contacts for 4ODM

CSU: Contacts of Structural Units for 4ODM

Structure Factors (766 Kb)

Retrieve 4ODM in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4ODM from S2C, [Save to disk]

Re-refined 4odm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4ODM in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4odm_C] [4odm_D] [4odm_E] [4odm_F] [4odm_G] [4odm_H] [4odm_I] [4odm_J] [4odm] [4odm_K] [4odm_A] [4odm_L] [4odm_B] [4odm_M]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]