4OGC Crystal structure of the Type II-C Cas9 enzyme from Actinomyces naeslundii date
authors Jiang, F., Ma, E., Lin, S., Doudna, J.A.
compound source
symmetry
R_factor
R_Free 0.2331
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand ACT, MG, MN, MSE, SPD, ZN enzyme
Gene HMPREF1129
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


  • Primary referenceStructures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation., Jinek M, Jiang F, Taylor DW, Sternberg SH, Kaya E, Ma E, Anders C, Hauer M, Zhou K, Lin S, Kaplan M, Iavarone AT, Charpentier E, Nogales E, Doudna JA, Science. 2014 Feb 6. PMID:24505130
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (4ogc.pdb1.gz) 294 Kb
  • LPC: Ligand-Protein Contacts for 4OGC
  • CSU: Contacts of Structural Units for 4OGC
  • Structure Factors (2180 Kb)
  • Retrieve 4OGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OGC from S2C, [Save to disk]
  • Re-refined 4ogc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OGC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OGC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ogc] [4ogc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OGC: [HNHc ] by SMART
  • Other resources with information on 4OGC
  • Community annotation for 4OGC at PDBWiki (http://pdbwiki.org)

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