4OGE Crystal structure of the Type II-C Cas9 enzyme from Actinomyces naeslundii date
authors Jiang, F., Ma, E., Lin, S., Doudna, J.A.
compound source
symmetry
R_factor
R_Free 0.2262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand MG, SPD, ZN enzyme
Gene HMPREF1129
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


    • Primary referenceStructures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation., Jinek M, Jiang F, Taylor DW, Sternberg SH, Kaya E, Ma E, Anders C, Hauer M, Zhou K, Lin S, Kaplan M, Iavarone AT, Charpentier E, Nogales E, Doudna JA, Science. 2014 Feb 6. PMID:24505130
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (321 Kb) [Save to disk]
  • Biological Unit Coordinates (4oge.pdb1.gz) 314 Kb
  • LPC: Ligand-Protein Contacts for 4OGE
  • CSU: Contacts of Structural Units for 4OGE
  • Structure Factors (4533 Kb)
  • Retrieve 4OGE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OGE from S2C, [Save to disk]
  • Re-refined 4oge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OGE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OGE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OGE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oge] [4oge_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OGE: [HNHc ] by SMART
    • Other resources with information on 4OGE
  • Community annotation for 4OGE at PDBWiki (http://pdbwiki.org)

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