4OJX	Hydrolase	date	Jan 21, 2014
title	Crystal Structure Of Yeast Phosphodiesterase-1 In Complex Wi
authors	Y.Tian, W.Cui, M.Huang, H.Robinson, Y.Wan, Y.Wang, H.Ke
compound		source
Molecule: 3',5'-Cyclic-Nucleotide Phosphodiesterase 1 Chain: A Synonym: Pdease 1,3':5'-Cnp,Low-Affinity Camp Phosphodieste Ec: 3.1.4.17 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae S288c Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Pde1, Ygl248w, Nrb369 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 2 2 21	R_factor 0.168 R_Free 0.179
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.674 85.162 130.836 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.31 Å
ligand	5GP, G, MPD, ZN	enzyme	Hydrolase E.C.3.1.4.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cyclic adenosine and guanosine 3',5'-monophosphate., Tian Y, Cui W, Huang M, Robinson H, Wan Y, Wang Y, Ke H, Biochemistry. 2014 Aug 5;53(30):4938-45. doi: 10.1021/bi500406h. Epub 2014 Jul, 22. PMID:25050706

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk] Biological Unit Coordinates (4ojx.pdb1.gz) 248 Kb LPC: Ligand-Protein Contacts for 4OJX CSU: Contacts of Structural Units for 4OJX Structure Factors (1826 Kb) Retrieve 4OJX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4OJX from S2C, [Save to disk] Re-refined 4ojx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4OJX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4OJX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4OJX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ojx_A] [4ojx] SWISS-PROT database: Domain organization of by SWISSPFAM

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