4OT1 Structural Basis for the Recognition of Human Cytomegalovirus Glycoprotein B by the Neutralizing Human Antibody SM5-1 date
authors Diestel, U., Muller, Y.A.
compound source
symmetry
R_factor
R_Free 0.23051
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.11
ligand EDO, EPE enzyme
Primary referenceStructural basis for the recognition of human cytomegalovirus glycoprotein B by a neutralizing human antibody., Spindler N, Diestel U, Stump JD, Wiegers AK, Winkler TH, Sticht H, Mach M, Muller YA, PLoS Pathog. 2014 Oct 9;10(10):e1004377. doi: 10.1371/journal.ppat.1004377., eCollection 2014 Oct. PMID:25299639
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (4ot1.pdb1.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 4OT1
  • CSU: Contacts of Structural Units for 4OT1
  • Structure Factors (302 Kb)
  • Retrieve 4OT1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OT1 from S2C, [Save to disk]
  • Re-refined 4ot1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OT1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OT1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OT1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ot1] [4ot1_A] [4ot1_L] [4ot1_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OT1: [IG_like] [IGv ] by SMART
    • Other resources with information on 4OT1
  • Community annotation for 4OT1 at PDBWiki (http://pdbwiki.org)

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