4PD4 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 3PE, 3PH, AOQ, FES, HEM, UMQ, UQ6 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ubiquinol-cytochrome-c reduc...


    • B


    C


    D


    E


    F


    G


    H


    I


    K


    Primary referenceStructural analysis of atovaquone-inhibited cytochrome bc1 complex reveals the molecular basis of antimalarial drug action., Birth D, Kao WC, Hunte C, Nat Commun. 2014 Jun 4;5:4029. doi: 10.1038/ncomms5029. PMID:24893593
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (363 Kb) [Save to disk]
  • Biological Unit Coordinates (4pd4.pdb1.gz) 699 Kb
  • LPC: Ligand-Protein Contacts for 4PD4
  • CSU: Contacts of Structural Units for 4PD4
  • Structure Factors (1252 Kb)
  • Retrieve 4PD4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PD4 from S2C, [Save to disk]
  • Re-refined 4pd4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PD4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pd4] [4pd4_A] [4pd4_B] [4pd4_C] [4pd4_D] [4pd4_E] [4pd4_F] [4pd4_G] [4pd4_H] [4pd4_I] [4pd4_J] [4pd4_K]
  • SWISS-PROT database:
  • Domain found in 4PD4: [IGv ] by SMART

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