4PLE Transcription date May 16, 2014
title Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1, Bo E. Coli Phospholipid And A Fragment Of Tif-2
authors E.A.Ortlund, P.M.Musille
compound source
Molecule: Nuclear Receptor Subfamily 5 Group A Member 2
Chain: A, C, E, G
Fragment: Unp Residues 301-541
Synonym: Alpha-1-Fetoprotein Transcription Factor,B1-Bindin Hb1f,Cyp7a Promoter-Binding Factor,Hepatocytic Transcriptio Liver Receptor Homolog 1,Lrh-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr5a2, B1f, Cpf, Ftf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Coactivator 2
Chain: B, D, F, H
Fragment: Unp Residues 740-753
Synonym: Ncoa-2,Class E Basic Helix-Loop-Helix Protein 75,B Transcriptional Intermediary Factor 2,Htif2;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.947 76.885 108.482 90.00 95.46 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand CPS, EPH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceUnexpected Allosteric Network Contributes to LRH-1 Coregulator Selectivity., Musille PM, Kossmann BR, Kohn JA, Ivanov I, Ortlund EA, J Biol Chem. 2015 Nov 9. pii: jbc.M115.662874. PMID:26553876
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (365 Kb) [Save to disk]
  • Biological Unit Coordinates (4ple.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (4ple.pdb2.gz) 90 Kb
  • Biological Unit Coordinates (4ple.pdb3.gz) 93 Kb
  • Biological Unit Coordinates (4ple.pdb4.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 4PLE
  • CSU: Contacts of Structural Units for 4PLE
  • Structure Factors (741 Kb)
  • Retrieve 4PLE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PLE from S2C, [Save to disk]
  • Re-refined 4ple structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PLE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PLE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4ple from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ple] [4ple_B] [4ple_E] [4ple_H] [4ple_D] [4ple_C] [4ple_G] [4ple_A] [4ple_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PLE: [HOLI ] by SMART
  • Other resources with information on 4PLE
  • Community annotation for 4PLE at PDBWiki (http://pdbwiki.org)

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