4Q0C 3.1 A resolution crystal structure of the B. pertussis BvgS periplasmic domain date
authors Dupre, E., Herrou, J., Lensink, M.F., Wintjens, R., Lebedev, A., Crosson, S., Villeret, V., Locht, C., Antoine, R., Jacob-Dubuisson, F.
compound source
symmetry
R_factor
R_Free 0.2446
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceVirulence Regulation with Venus Flytrap Domains: Structure and Function of the Periplasmic Moiety of the Sensor-Kinase BvgS., Dupre E, Herrou J, Lensink MF, Wintjens R, Vagin A, Lebedev A, Crosson S, Villeret V, Locht C, Antoine R, Jacob-Dubuisson F, PLoS Pathog. 2015 Mar 4;11(3):e1004700. doi: 10.1371/journal.ppat.1004700., eCollection 2015 Mar. PMID:25738876
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (317 Kb) [Save to disk]
  • Biological Unit Coordinates (4q0c.pdb1.gz) 157 Kb
  • Biological Unit Coordinates (4q0c.pdb2.gz) 159 Kb
  • CSU: Contacts of Structural Units for 4Q0C
  • Structure Factors (437 Kb)
  • Retrieve 4Q0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q0C from S2C, [Save to disk]
  • Re-refined 4q0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Q0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Q0C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q0C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q0c_A] [4q0c_D] [4q0c_C] [4q0c_B] [4q0c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Q0C: [PBPb ] by SMART
    • Other resources with information on 4Q0C
  • Community annotation for 4Q0C at PDBWiki (http://pdbwiki.org)

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