4QWC	Transferase Dna	date	Jul 16, 2014
title	Ternary Crystal Structures Of A Y-Family Dna Polymerase Dpo4 Sulfobus Solfataricus In Comples With Dna And L-Dcdp
authors	R.Vyas, Z.Suo
compound		source
Molecule: Dna Polymerase Iv Chain: A, D Fragment: Dpo4 Synonym: Pol Iv Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Saccharolobus Solfataricus P2 Organism_taxid: 273057 Strain: Atcc 35092 Dsm 1617 Jcm 11322 P2 Gene: Dbh, Dpo4, Sso2448 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet21b
Molecule: Dna (5'-D(Gpgpcptpapcpapgpgpapcptpc) Chain: B, E Fragment: Dna Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Dna Organism_taxid: 32630
Molecule: Dna (5'- D(Tptpcpapgpgpapgptpcpcptpgptpapgpcpc)-3' Chain: C, F Fragment: Dna Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Dna Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.227 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.440 101.930 105.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ACT, CA, DOC, LTP	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, D
Primary reference	Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase., Gaur V, Vyas R, Fowler JD, Efthimiopoulos G, Feng JY, Suo Z, Nucleic Acids Res. 2014 Aug 7. pii: gku709. PMID:25104018

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk] Biological Unit Coordinates (4qwc.pdb1.gz) 144 Kb Biological Unit Coordinates (4qwc.pdb2.gz) 144 Kb LPC: Ligand-Protein Contacts for 4QWC CSU: Contacts of Structural Units for 4QWC Structure Factors (1688 Kb) Retrieve 4QWC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4QWC from S2C, [Save to disk] Re-refined 4qwc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4QWC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4QWC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4QWC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4qwc_A] [4qwc_E] [4qwc] [4qwc_F] [4qwc_C] [4qwc_B] [4qwc_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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