4RY9 Crystal structure of carbohydrate transporter solute binding protein VEIS_2079 from Verminephrobacter eiseniae EF01-2, TARGET EFI-511009, a complex with D-TALITOL date
authors Patskovsky, Y., Toro, R., Bhosle, R., Obaidi, N.Al., Morisco, L.L., Wasserman, S.R., Chamala, S., Attonito, J.D., Glenn, A.Scott., Chowdhury, S., Lafleur, J., Hillerich, B., Siedel, R.D., Love, J., Whalen, K.L., Gerlt, J.A., Almo, S.C., EFI, Enzyme.Function.Initiative.
compound source
symmetry
R_factor
R_Free 0.15090
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand BCT, GOL, TLZ enzyme
Gene VEIS
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (4ry9.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (4ry9.pdb2.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 4RY9
  • CSU: Contacts of Structural Units for 4RY9
  • Structure Factors (5597 Kb)
  • Retrieve 4RY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RY9 from S2C, [Save to disk]
  • Re-refined 4ry9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RY9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RY9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ry9_B] [4ry9] [4ry9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RY9
  • Community annotation for 4RY9 at PDBWiki (http://pdbwiki.org)

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