4TR8 Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa date
authors Olieric, V., Burnouf, D., Ennifar, E., Wolff, P.
compound source
symmetry
R_factor
R_Free 0.2322
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand NA enzyme
Gene PA15
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity


    • Primary referenceDifferential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins., Wolff P, Amal I, Olieric V, Chaloin O, Gygli G, Ennifar E, Lorber B, Guichard G, Wagner JE, Dejaegere A, Burnouf DY, J Med Chem. 2014 Aug 29. PMID:25170813
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (4tr8.pdb1.gz) 232 Kb
  • LPC: Ligand-Protein Contacts for 4TR8
  • CSU: Contacts of Structural Units for 4TR8
  • Structure Factors (723 Kb)
  • Retrieve 4TR8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TR8 from S2C, [Save to disk]
  • Re-refined 4tr8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TR8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TR8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TR8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tr8_B] [4tr8] [4tr8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4TR8: [POL3Bc ] by SMART
    • Other resources with information on 4TR8
  • Community annotation for 4TR8 at PDBWiki (http://pdbwiki.org)

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