4UB8 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BCR, BCT, CA, CL, CLA, DGD, FE2, FME, GOL, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, SQD, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, b


C, c


E, e


F, f


H, h


J, j


L, l


M, m


O, o
  • oxygen evolving activity


    • R


    V, v


    X, x


    Z, z


    a, A


    d, D


    i, I


    k, K


    t, T


    u, U


    y, Y


    Primary referenceNative structure of photosystem II at 1.95 A resolution viewed by femtosecond X-ray pulses., Suga M, Akita F, Hirata K, Ueno G, Murakami H, Nakajima Y, Shimizu T, Yamashita K, Yamamoto M, Ago H, Shen JR, Nature. 2015 Jan 1;517(7532):99-103. doi: 10.1038/nature13991. Epub 2014 Nov 26. PMID:25470056
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2225 Kb) [Save to disk]
  • Biological Unit Coordinates (4ub8.pdb1.gz) 1093 Kb
  • Biological Unit Coordinates (4ub8.pdb2.gz) 1074 Kb
  • LPC: Ligand-Protein Contacts for 4UB8
  • CSU: Contacts of Structural Units for 4UB8
  • Structure Factors (7394 Kb)
  • Retrieve 4UB8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UB8 from S2C, [Save to disk]
  • Re-refined 4ub8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UB8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ub8] [4ub8_A] [4ub8_B] [4ub8_C] [4ub8_D] [4ub8_E] [4ub8_F] [4ub8_H] [4ub8_I] [4ub8_J] [4ub8_K] [4ub8_L] [4ub8_M] [4ub8_O] [4ub8_R] [4ub8_T] [4ub8_U] [4ub8_V] [4ub8_X] [4ub8_Y] [4ub8_Z] [4ub8_a] [4ub8_b] [4ub8_c] [4ub8_d] [4ub8_e] [4ub8_f] [4ub8_h] [4ub8_i] [4ub8_j] [4ub8_k] [4ub8_l] [4ub8_m] [4ub8_o] [4ub8_t] [4ub8_u] [4ub8_v] [4ub8_x] [4ub8_y] [4ub8_z]
  • SWISS-PROT database:

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