4UD8 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FAD, K, NA, NAG, PE5 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Plant Cell Wall Metabolism., Daniel B, Pavkov-Keller T, Steiner B, Dordic A, Gutmann A, Nidetzky B, Sensen CW, van der Graaff E, Wallner S, Gruber K, Macheroux P, J Biol Chem. 2015 Jul 24;290(30):18770-81. doi: 10.1074/jbc.M115.659631. Epub, 2015 Jun 2. PMID:26037923
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (343 Kb) [Save to disk]
  • Biological Unit Coordinates (4ud8.pdb1.gz) 170 Kb
  • Biological Unit Coordinates (4ud8.pdb2.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 4UD8
  • CSU: Contacts of Structural Units for 4UD8
  • Structure Factors (1060 Kb)
  • Retrieve 4UD8 in mmCIF format [Save to disk]
  • Re-refined 4ud8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UD8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ud8] [4ud8_A] [4ud8_B]
  • SWISS-PROT database:

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