4V19 Structure of the large subunit of the mammalian mitoribosome, part 1 of 2 date
authors Greber, B.J., Boehringer, D., Leibundgut, M., Bieri, P., Leitner, A., Schmitz, N., Aebersold, R., Ban, N.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
ligand MG, P5P, Y5P, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
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Primary referenceThe complete structure of the large subunit of the mammalian mitochondrial ribosome., Greber BJ, Boehringer D, Leibundgut M, Bieri P, Leitner A, Schmitz N, Aebersold R, Ban N, Nature. 2014 Oct 1. doi: 10.1038/nature13895. PMID:25271403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1431 Kb) [Save to disk]
  • Biological Unit Coordinates (4v19.pdb1.gz) 1398 Kb
  • LPC: Ligand-Protein Contacts for 4V19
  • CSU: Contacts of Structural Units for 4V19
  • Retrieve 4V19 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V19 from S2C, [Save to disk]
    • View 4V19 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V19
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4V19, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v19_6] [4v19_X] [4v19_1] [4v19_I] [4v19_K] [4v19_S] [4v19_P] [4v19_T] [4v19_Y] [4v19_J] [4v19_9] [4v19_4] [4v19] [4v19_Q] [4v19_C] [4v19_U] [4v19_D] [4v19_Z] [4v19_7] [4v19_R] [4v19_F] [4v19_0] [4v19_8] [4v19_N] [4v19_3] [4v19_V] [4v19_5] [4v19_E] [4v19_2] [4v19_A] [4v19_W] [4v19_B] [4v19_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V19: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
    • Other resources with information on 4V19
  • Community annotation for 4V19 at PDBWiki (http://pdbwiki.org)

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