4V1D Ternary complex among two human derived single chain antibody fragments and Cn2 toxin from scorpion Centruroides noxius. date
authors Riano-Umbarila, L., Serrano-Posada, H., Rojas-Trejo, S., Rudino-Pinera, E., Becerril, B.
compound source
symmetry
R_factor
R_Free 0.2294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
Gene
Ontology
ChainFunctionProcessComponent
C
  • toxin activity


    • Primary referenceOptimal neutralization of Centruroides noxius venom is understood through a structural complex between two antibody fragments and the Cn2 toxin., Riano-Umbarila L, Ledezma-Candanoza LM, Serrano-Posada H, Fernandez-Taboada G, Olamendi-Portugal T, Rojas-Trejo S, Gomez-Ramirez IV, Rudino-Pinera E, Possani LD, Becerril B, J Biol Chem. 2015 Nov 20. pii: jbc.M115.685297. PMID:26589800
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4v1d.pdb1.gz) 82 Kb
  • CSU: Contacts of Structural Units for 4V1D
  • Structure Factors (177 Kb)
  • Retrieve 4V1D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V1D from S2C, [Save to disk]
  • Re-refined 4v1d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4V1D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V1D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v1d] [4v1d_C] [4v1d_B] [4v1d_D] [4v1d_E] [4v1d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V1D: [IGv] [Knot1 ] by SMART
    • Other resources with information on 4V1D
  • Community annotation for 4V1D at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science