4Y7P date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand SCN enzyme
Primary referenceStructural and computational analysis of peptide recognition mechanism of class-C type penicillin binding protein, alkaline D-peptidase from Bacillus cereus DF4-B., Nakano S, Okazaki S, Ishitsubo E, Kawahara N, Komeda H, Tokiwa H, Asano Y, Sci Rep. 2015 Sep 15;5:13836. doi: 10.1038/srep13836. PMID:26370172
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (4y7p.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (4y7p.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4Y7P
  • CSU: Contacts of Structural Units for 4Y7P
  • Structure Factors (664 Kb)
  • Retrieve 4Y7P in mmCIF format [Save to disk]
  • Re-refined 4y7p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y7p] [4y7p_A]
  • SWISS-PROT database:

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