4Y83	Transferase	date	Feb 16, 2015
title	Crystal Structure Of Cot Kinase Domain In Complex With 5-(2- (Quinolin-3-Yl)Pyridin-3-Yl)-1,3,4-Oxadiazole-2(3h)-Thione
authors	S.Gutmann, A.Hinniger
compound		source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 8 Chain: A, B, C Synonym: Cancer Osaka Thyroid Oncogene,Proto-Oncogene C-Cot Serinethreonine-Protein Kinase Cot,Tumor Progression Locus Ec: 2.7.11.25 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Map3k8, Cot, Estf Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf21 Expression_system_vector: Pfastbac1-Hm
symmetry	Space Group: P 31	R_factor 0.202 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.952 101.952 108.315 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.89 Å
ligand	49B	enzyme	Transferase E.C.2.7.11.25 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	The Crystal Structure of Cancer Osaka Thyroid Kinase Reveals an Unexpected Kinase Domain Fold., Gutmann S, Hinniger A, Fendrich G, Drueckes P, Antz S, Mattes H, Moebitz H, Ofner S, Schmiedeberg N, Stojanovic A, Rieffel S, Strauss A, Troxler T, Glatthar R, Sparrer H, J Biol Chem. 2015 Apr 27. pii: jbc.M115.648097. PMID:25918157

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk] Biological Unit Coordinates (4y83.pdb1.gz) 95 Kb Biological Unit Coordinates (4y83.pdb2.gz) 94 Kb Biological Unit Coordinates (4y83.pdb3.gz) 83 Kb LPC: Ligand-Protein Contacts for 4Y83 CSU: Contacts of Structural Units for 4Y83 Structure Factors (283 Kb) Retrieve 4Y83 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4Y83 from S2C, [Save to disk] Re-refined 4y83 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Y83 in 3D

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Visual 3D analysis of 4Y83

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4Y83, from MSDmotif at EBI Fold representative 4y83 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4y83_A] [4y83_B] [4y83_C] [4y83] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4Y83: [STYKc ] by SMART

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