OCA Atlas for 4YHD

4YHD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, E, C, D, G, A	toxin activity

Primary reference

Structural basis for pore-forming mechanism of staphylococcal alpha-hemolysin., Sugawara T, Yamashita D, Kato K, Peng Z, Ueda J, Kaneko J, Kamio Y, Tanaka Y, Yao M, Toxicon. 2015 Sep 28. pii: S0041-0101(15)30093-3. doi:, 10.1016/j.toxicon.2015.09.033. PMID:26428390

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (516 Kb) [Save to disk]

Biological Unit Coordinates (4yhd.pdb1.gz) 89 Kb

Biological Unit Coordinates (4yhd.pdb2.gz) 89 Kb

Biological Unit Coordinates (4yhd.pdb3.gz) 88 Kb

Biological Unit Coordinates (4yhd.pdb4.gz) 90 Kb

Biological Unit Coordinates (4yhd.pdb5.gz) 86 Kb

Biological Unit Coordinates (4yhd.pdb6.gz) 88 Kb

LPC: Ligand-Protein Contacts for 4YHD

CSU: Contacts of Structural Units for 4YHD

Structure Factors (502 Kb)

Retrieve 4YHD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4YHD from S2C, [Save to disk]

Re-refined 4yhd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YHD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yhd] [4yhd_A] [4yhd_B] [4yhd_C] [4yhd_D] [4yhd_E] [4yhd_G]

SWISS-PROT database:

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