OCA Atlas for 4YHH

4YHH

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, T1C, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
V

Primary reference

Structural characterization of an alternative-binding mode for tigecycline to the bacterial ribosome., Schedlbauer A, Kaminishi T, Ochoa-Lizarralde B, Dhimole N, Zhou S, Lopez-Alonso JP, Connell SR, Fucini P, Antimicrob Agents Chemother. 2015 Mar 9. pii: AAC.04895-14. PMID:25753625

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1040 Kb) [Save to disk]

Biological Unit Coordinates (4yhh.pdb1.gz) 1029 Kb

LPC: Ligand-Protein Contacts for 4YHH

CSU: Contacts of Structural Units for 4YHH

Structure Factors (1878 Kb)

Retrieve 4YHH in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4YHH from S2C, [Save to disk]

Re-refined 4yhh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YHH in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yhh] [4yhh_A] [4yhh_B] [4yhh_C] [4yhh_D] [4yhh_E] [4yhh_F] [4yhh_G] [4yhh_H] [4yhh_I] [4yhh_J] [4yhh_K] [4yhh_L] [4yhh_M] [4yhh_N] [4yhh_O] [4yhh_P] [4yhh_Q] [4yhh_R] [4yhh_S] [4yhh_T] [4yhh_V]

SWISS-PROT database:

Domains found in 4YHH: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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