4YVS crystal structure of the virus-like particle of a c4 strain EV71 date
authors Chen, R., Lyu, K.
compound source
symmetry
R_factor
R_Free 0.3003
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.65
Gene
Ontology
ChainFunctionProcessComponent
A, J, N, K, E, B, H, M, D, G


F, O, C, I, L


Primary referenceCrystal structures of yeast-produced enterovirus 71 and enterovirus 71/coxsackievirus A16 chimeric virus-like particles provide structural basis for novel vaccine design against hand-foot-and-mouth disease., Lyu K, He YL, Li HY, Chen R, J Virol. 2015 Apr 1. pii: JVI.00422-15. PMID:25833050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (547 Kb) [Save to disk]
  • Biological Unit Coordinates (4yvs.pdb1.gz) 6366 Kb
  • CSU: Contacts of Structural Units for 4YVS
  • Structure Factors (469 Kb)
  • Retrieve 4YVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YVS from S2C, [Save to disk]
  • Re-refined 4yvs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YVS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YVS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yvs_F] [4yvs_H] [4yvs_B] [4yvs_G] [4yvs_M] [4yvs_C] [4yvs_K] [4yvs_L] [4yvs_E] [4yvs_A] [4yvs_J] [4yvs_O] [4yvs_D] [4yvs_I] [4yvs_N] [4yvs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YVS
  • Community annotation for 4YVS at PDBWiki (http://pdbwiki.org)

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