4YWU Structural insight into the substrate inhibition mechanism of NADP+-dependent succinic semialdehyde dehydrogenase from Streptococcus pyogenes date
authors Jang, E.H., Park, S.A., Chi, Y.M., Lee, K.S.
compound source
symmetry
R_factor
R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand SO4, SSN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insight into the substrate inhibition mechanism of NADP-dependent succinic semialdehyde dehydrogenase from Streptococcus pyogenes., Jang EH, Park SA, Chi YM, Lee KS, Biochem Biophys Res Commun. 2015 Apr 16. pii: S0006-291X(15)00725-1. doi:, 10.1016/j.bbrc.2015.04.047. PMID:25888791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (4ywu.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 4YWU
  • CSU: Contacts of Structural Units for 4YWU
  • Structure Factors (409 Kb)
  • Retrieve 4YWU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YWU from S2C, [Save to disk]
  • Re-refined 4ywu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YWU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YWU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YWU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ywu_A] [4ywu_B] [4ywu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YWU
  • Community annotation for 4YWU at PDBWiki (http://pdbwiki.org)

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