5A15 Crystal structure of the BTB domain of human KCTD16 date
authors Pinkas, D.M., Sanvitale, C.E., Solcan, N., Goubin, S., Canning, P., Clarke, S.E.Dixon., Talon, R., Wiggers, H.J., Fitzpatrick, F., Tallant, C., Kopec, J., Chalk, R., Doutch, J., Krojer, T., Burgess-Brown, N.A., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A.
compound source
symmetry
R_factor
R_Free 0.2586
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.76
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceStructural complexity in the KCTD family of Cullin3-dependent E3 ubiquitin ligases., Pinkas DM, Sanvitale CE, Bufton JC, Sorrell FJ, Solcan N, Chalk R, Doutch J, Bullock AN, Biochem J. 2017 Nov 1;474(22):3747-3761. doi: 10.1042/BCJ20170527. PMID:28963344
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (456 Kb) [Save to disk]
  • Biological Unit Coordinates (5a15.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (5a15.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (5a15.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (5a15.pdb4.gz) 34 Kb
  • Biological Unit Coordinates (5a15.pdb5.gz) 32 Kb
  • Biological Unit Coordinates (5a15.pdb6.gz) 33 Kb
  • Biological Unit Coordinates (5a15.pdb7.gz) 33 Kb
  • Biological Unit Coordinates (5a15.pdb8.gz) 33 Kb
  • Biological Unit Coordinates (5a15.pdb9.gz) 33 Kb
  • CSU: Contacts of Structural Units for 5A15
  • Structure Factors (2785 Kb)
  • Retrieve 5A15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A15 from S2C, [Save to disk]
  • Re-refined 5a15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A15
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a15_F] [5a15_D] [5a15_B] [5a15_M] [5a15_L] [5a15_I] [5a15_E] [5a15_O] [5a15_A] [5a15_K] [5a15_J] [5a15_N] [5a15_H] [5a15_C] [5a15_G] [5a15]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A15: [BTB ] by SMART
    • Other resources with information on 5A15
  • Community annotation for 5A15 at PDBWiki (http://pdbwiki.org)

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