5AEE A bacterial protein structure in glycoside hydrolase family 31 date
authors Jin, Y., Speciale, G., Davies, G.J., Williams, S.J., Goddard-Borger, E.D.
compound source
symmetry
R_factor
R_Free 0.20090
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand CA, CL, MPD, NSQ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceYihQ is a sulfoquinovosidase that cleaves sulfoquinovosyl diacylglyceride sulfolipids., Speciale G, Jin Y, Davies GJ, Williams SJ, Goddard-Borger ED, Nat Chem Biol. 2016 Feb 15. doi: 10.1038/nchembio.2023. PMID:26878550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (5aee.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (5aee.pdb2.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 5AEE
  • CSU: Contacts of Structural Units for 5AEE
  • Structure Factors (2286 Kb)
  • Retrieve 5AEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AEE from S2C, [Save to disk]
  • Re-refined 5aee structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AEE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aee] [5aee_A] [5aee_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5AEE
  • Community annotation for 5AEE at PDBWiki (http://pdbwiki.org)

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