5AFF Symportin 1 chaperones 5S RNP assembly during ribosome biogenesis by occupying an essential rRNA binding site date
authors Calvino, F.R., Kharde, S., Wild, K., Bange, G., Sinning, I.
compound source
symmetry
R_factor
R_Free 0.2998
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceSymportin 1 chaperones 5S RNP assembly during ribosome biogenesis by occupying an essential rRNA-binding site., Calvino FR, Kharde S, Ori A, Hendricks A, Wild K, Kressler D, Bange G, Hurt E, Beck M, Sinning I, Nat Commun. 2015 Apr 7;6:6510. doi: 10.1038/ncomms7510. PMID:25849277
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (5aff.pdb1.gz) 241 Kb
  • CSU: Contacts of Structural Units for 5AFF
  • Structure Factors (736 Kb)
  • Retrieve 5AFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AFF from S2C, [Save to disk]
  • Re-refined 5aff structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AFF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5AFF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aff_C] [5aff] [5aff_A] [5aff_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5AFF
  • Community annotation for 5AFF at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science