5AOR Hydrolase Rna date Sep 11, 2015
title Structure Of Mle Rna Adp Alf4 Complex
authors J.R.Prabu, E.Conti
compound source
Molecule: Dosage Compensation Regulator
Chain: A, B
Synonym: Atp-Dependent Rna Helicase Mle, Protein Male-Less, Maleless, Protein No Action Potential, Mle Helicase;
Ec: 3.6.4.13
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-R(Upupupupupupupupupupup)-3'
Chain: C, D
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 43 21 2
R_factor 0.190 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.373 154.373 198.194 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.08 Å
ligand ADP, ALF, GOL, MG enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (683 Kb) [Save to disk]
  • Biological Unit Coordinates (5aor.pdb1.gz) 341 Kb
  • Biological Unit Coordinates (5aor.pdb2.gz) 339 Kb
  • LPC: Ligand-Protein Contacts for 5AOR
  • CSU: Contacts of Structural Units for 5AOR
  • Structure Factors (3688 Kb)
  • Retrieve 5AOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AOR from S2C, [Save to disk]
  • Re-refined 5aor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AOR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aor_A] [5aor_D] [5aor] [5aor_C] [5aor_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5AOR: [DEXDc] [DSRM] [HA2] [HELICc ] by SMART
    • Other resources with information on 5AOR
  • Community annotation for 5AOR at PDBWiki (http://pdbwiki.org)

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