5AVD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Growth of protein crystals in hydrogels prevents osmotic shock., Sugiyama S, Maruyama M, Sazaki G, Hirose M, Adachi H, Takano K, Murakami S, Inoue T, Mori Y, Matsumura H, J Am Chem Soc. 2012 Apr 4;134(13):5786-9. doi: 10.1021/ja301584y. Epub 2012 Mar, 27. PMID:22435400

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (5avd.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 5AVD CSU: Contacts of Structural Units for 5AVD Structure Factors (1674 Kb) Retrieve 5AVD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AVD from S2C, [Save to disk] Re-refined 5avd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AVD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5avd] [5avd_A] SWISS-PROT database: Domain found in 5AVD: [Tryp_SPc ] by SMART

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