5AVI	Transcription	date	Jun 16, 2015
title	Crystal Structure Of Lxralpha In Complex With Tert-Butyl Ben Analog, Compound 4
authors	Y.Matsui, H.Hanzawa, K.Tamaki
compound		source
Molecule: Oxysterols Receptor Lxr-Alpha Chain: A, C Fragment: Ligand Binding Domain, Unp Residues 182-447 Synonym: Liver X Receptor Alpha,Nuclear Receptor Subfamily Member 3; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1h3, Lxra Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
Molecule: Nuclear Receptor Coactivator 1 Chain: B, D Fragment: Unp Residues 676-700 Synonym: Ncoa-1,Class E Basic Helix-Loop-Helix Protein 74,B Protein Hin-2,Rip160,Renal Carcinoma Antigen Ny-Ren-52,Ster Receptor Coactivator 1,Src-1; Ec: 2.3.1.48 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 4 21 2	R_factor 0.244 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.356 124.356 91.916 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	4KM	enzyme	Transferase E.C.2.3.1.48 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Discovery and structure-guided optimization of tert-butyl 6-(phenoxymethyl)-3-(trifluoromethyl)benzoates as liver X receptor agonists., Matsui Y, Yamaguchi T, Yamazaki T, Yoshida M, Arai M, Terasaka N, Honzumi S, Wakabayashi K, Hayashi S, Nakai D, Hanzawa H, Tamaki K, Bioorg Med Chem Lett. 2015 Sep 15;25(18):3914-20. doi:, 10.1016/j.bmcl.2015.07.047. Epub 2015 Jul 23. PMID:26238323

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk] Biological Unit Coordinates (5avi.pdb1.gz) 164 Kb LPC: Ligand-Protein Contacts for 5AVI CSU: Contacts of Structural Units for 5AVI Structure Factors (374 Kb) Retrieve 5AVI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AVI from S2C, [Save to disk] Re-refined 5avi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AVI in 3D

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Visual 3D analysis of 5AVI

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5avi_A] [5avi] [5avi_C] [5avi_D] [5avi_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5AVI: [HOLI ] by SMART

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